Appendix B — Docker Container
We provide a R-focused docker container that can be used in GitHub Actions or other workflows for generating forecasts.
The container eco4cast/rocker-neon4cast can be found on Docker Hub (https://hub.docker.com/repository/docker/eco4cast/rocker-neon4cast). eco4cast/rocker-binder also avialable and is the same as eco4cast/rocker-neon4cast but minor differences that are specific for using as a Binder. Both containers are built off the rocker/geospatial:latest image and include Rstudio.
Follow the directions at https://rocker-project.org for launching the container locally from your web browser (requires a local installation of Docker Desktop)
Both containers have the following R packages (including neon4cast specific packages):
Package Version
abind 1.4-5
anytime 0.3.9
arrayhelpers 1.1-0
arrow 9.0.0
askpass 1.1
assertthat 0.2.1
aws.s3 0.3.22
aws.signature 0.6.0
backports 1.4.1
base64enc 0.1-3
bench 1.1.2
BH 1.78.0-0
BiocManager 1.30.18
BiocVersion 3.15.2
bit 4.0.4
bit64 4.0.5
bitops 1.0-7
blob 1.2.3
blogdown 1.11
bookdown 0.28
brew 1.0-7
brio 1.1.3
broom 1.0.1
bslib 0.4.0
cachem 1.0.6
callr 3.7.2
cellranger 1.1.0
checkmate 2.1.0
classInt 0.4-7
cli 3.3.0
clipr 0.8.0
coda 0.19-4
colorspace 2.0-3
commonmark 1.8.0
contentid 0.0.15
covr 3.6.0
cpp11 0.4.2
crayon 1.5.1
credentials 1.3.2
cronR 0.4.2
crosstalk 1.2.0
curl 4.3.2
data.table 1.14.2
DBI 1.1.3
dbplyr 2.2.1
deldir 1.0-6
desc 1.4.1
devtools 2.4.4
DiagrammeR 1.0.9
dichromat 2.0-0.1
diffobj 0.3.5
digest 0.6.29
distill 1.4
distributional 0.3.0
docopt 0.7.1
downlit 0.4.2
downloader 0.4
dplyr 1.0.10
dtplyr 1.2.2
duckdb 0.4.0
e1071 1.7-11
ecoforecastR 0.1.0
EFIstandards 0.1.1
ellipsis 0.3.2
EML 2.0.6.1
emld 0.5.1
evaluate 0.16
expm 0.999-6
fable 0.3.2
fabletools 0.3.2
fansi 1.0.3
farver 2.1.1
fastmap 1.1.0
flexdashboard 0.6.0
FNN 1.1.3.1
fontawesome 0.3.0
forcats 0.5.2
forecast 8.17.0
fracdiff 1.5-1
fs 1.5.2
fst 0.9.8
fstcore 0.9.12
gargle 1.2.0
gdata 2.18.0.1
gefs4cast 0.0.0.9900
generics 0.1.3
geojsonsf 2.0.3
geometries 0.2.0
geoR 1.9-2
geosphere 1.5-14
gert 1.7.1
ggdist 3.2.0
ggplot2 3.3.6
ggtext 0.1.1
gh 1.3.0
gitcreds 0.1.1
glue 1.6.2
gmodels 2.18.1.1
goftest 1.2-3
googledrive 2.0.0
googlesheets4 1.0.1
gridExtra 2.3
gridtext 0.1.4
gstat 2.0-9
gtable 0.3.1
gtools 3.9.3
haven 2.5.1
hdf5r 1.3.5
HDInterval 0.2.2
highr 0.9
hms 1.1.2
htmltools 0.5.3
htmlwidgets 1.5.4
httpuv 1.6.5
httr 1.4.4
ids 1.0.1
igraph 1.3.4
imputeTS 3.2
influenceR 0.1.0.1
ini 0.3.1
intervals 0.15.2
isoband 0.2.5
ISOweek 0.6-2
jpeg 0.1-9
jqr 1.2.3
jquerylib 0.1.4
jsonify 1.2.1
jsonld 2.2
jsonlite 1.8.0
knitr 1.40
labeling 0.4.2
Lahman 10.0-1
later 1.3.0
lazyeval 0.2.2
leafem 0.2.0
leaflet 2.1.1
leaflet.providers 1.9.0
leafpop 0.1.0
leafsync 0.1.0
LearnBayes 2.15.1
lidR 4.0.1
lifecycle 1.0.1
littler 0.3.15
lmtest 0.9-40
lubridate 1.8.0
lwgeom 0.2-8
magrittr 2.0.3
mapdata 2.3.0
maps 3.4.0
maptools 1.1-4
mapview 2.11.0
markdown 1.1
matrixStats 0.62.0
memoise 2.0.1
mime 0.12
miniUI 0.1.1.1
modelr 0.1.9
munsell 0.5.0
ncdf4 1.19
ncmeta 0.3.0
neon4cast 0.1.0
neonstore 0.4.4
numDeriv 2016.8-1.1
nycflights13 1.0.2
openssl 2.0.2
packrat 0.8.1
pillar 1.8.1
pkgbuild 1.3.1
pkgconfig 2.0.3
pkgdown 2.0.6
pkgload 1.3.0
plogr 0.2.0
plyr 1.8.7
png 0.1-7
polyclip 1.10-0
posterior 1.3.0
praise 1.0.0
prettyunits 1.1.1
processx 3.7.0
profmem 0.6.0
profvis 0.3.7
progress 1.2.2
progressr 0.10.1
proj4 1.0-11
promises 1.2.0.1
prov 0.0.1
proxy 0.4-27
ps 1.7.1
purrr 0.3.4
quadprog 1.5-8
quantmod 0.4.20
R.methodsS3 1.8.2
R.oo 1.25.0
R.utils 2.12.0
r2d3 0.2.6
R6 2.5.1
ragg 1.2.2
rapidjsonr 1.2.0
rappdirs 0.3.3
raster 3.5-29
rcmdcheck 1.4.0
RColorBrewer 1.1-3
Rcpp 1.0.9
RcppArmadillo 0.11.2.3.1
RCurl 1.98-1.8
read4cast 0.0.2
readr 2.1.2
readxl 1.4.1
redland 1.0.17-16
rematch 1.0.1
rematch2 2.1.2
remotes 2.4.2
renv 0.15.5
reprex 2.0.2
rex 1.2.1
rgdal 1.5-32
rgeos 0.5-9
rgl 0.109.6
rhdf5 2.40.0
rhdf5filters 1.8.0
Rhdf5lib 1.18.2
rjags 4-13
rJava 1.0-6
rlang 1.0.5
rlas 1.6.0
RMariaDB 1.2.2
rmarkdown 2.16
rmdshower 2.1.1
RNetCDF 2.6-1
roxygen2 7.2.1
RPostgres 1.4.4
rprojroot 2.0.3
rsconnect 0.8.27
RSQLite 2.2.16
rstudioapi 0.14
rticles 0.24
rversions 2.1.1
rvest 1.0.3
s2 1.1.0
sass 0.4.2
satellite 1.0.4
scales 1.2.1
score4cast 0.0.0.9000
scoringRules 1.0.1
selectr 0.4-2
servr 0.24
sessioninfo 1.2.2
sf 1.0-8
sfheaders 0.4.0
shiny 1.7.2
sourcetools 0.1.7
sp 1.5-0
spacetime 1.2-8
spatialreg 1.2-5
spatstat 2.3-4
spatstat.core 2.4-4
spatstat.data 2.2-0
spatstat.geom 2.4-0
spatstat.linnet 2.3-2
spatstat.random 2.2-0
spatstat.sparse 2.1-1
spatstat.utils 2.3-1
spData 2.0.1
spdep 1.2-5
splancs 2.01-43
stars 0.5-6
stinepack 1.4
storr 1.2.5
stringi 1.7.8
stringr 1.4.1
svglite 2.1.0
svUnit 1.0.6
sys 3.4
systemfonts 1.0.4
tensor 1.5
tensorA 0.36.2
terra 1.6-7
testit 0.13
testthat 3.1.4
textshaping 0.3.6
thor 1.1.2
tibble 3.1.8
tidybayes 3.0.2
tidync 0.2.4
tidyr 1.2.0
tidyselect 1.1.2
tidyverse 1.3.2
timeDate 4021.104
tinytex 0.41
tmap 3.3-3
tmaptools 3.1-1
tseries 0.10-51
tsibble 1.1.2
TTR 0.24.3
tufte 0.12
tzdb 0.3.0
udunits2 0.13.2.1
units 0.8-0
urca 1.3-3
urlchecker 1.0.1
usethis 2.1.6
utf8 1.2.2
uuid 1.1-0
V8 4.2.1
vctrs 0.4.1
viridis 0.6.2
viridisLite 0.4.1
visNetwork 2.1.0
vroom 1.5.7
waldo 0.4.0
webshot 0.5.3
whisker 0.4
whoami 1.3.0
widgetframe 0.3.1
withr 2.5.0
wk 0.6.0
xaringan 0.26
xfun 0.32
XML 3.99-0.10
xml2 1.3.3
xopen 1.0.0
xtable 1.8-4
xts 0.12.1
yaml 2.3.5
zip 2.2.0
zoo 1.8-10